All modules for which code is available
- analysis.__main__
- analysis.as_analysis
- analysis.as_analysis_sc
- analysis.compare_ai
- analysis.run_analysis
- analysis.run_analysis_sc
- analysis.run_compare_ai
- counting.__main__
- counting.count_alleles
- counting.count_alleles_sc
- counting.filter_variant_data
- counting.parse_gene_data
- counting.run_counting
- counting.run_counting_sc
- mapping.__main__
- mapping.filter_remap_reads
- mapping.intersect_variant_data
- mapping.make_remap_reads
- mapping.remap_utils
- mapping.run_mapping
- mapping.wasp_data_files