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WASP2 v1.3.0 with Nextflow pipelines is now available!
WASP2 1.4.0 documentation - Home WASP2 1.4.0 documentation - Home
  • Installation
  • Choosing the Right Workflow
  • Frequently Asked Questions
  • Counting Module
  • Mapping Module
    • Analysis Module
    • Single-Cell Analysis
    • Bulk Workflow (RNA-seq / ATAC-seq)
    • Single-Cell Workflow (scRNA-seq / scATAC-seq)
    • WASP Mapping Bias Correction
    • Counting Module API
    • Mapping Module API
    • Analysis Module API
    • Development Guide
    • Changelog
  • GitHub
  • PyPI
  • Installation
  • Choosing the Right Workflow
  • Frequently Asked Questions
  • Counting Module
  • Mapping Module
  • Analysis Module
  • Single-Cell Analysis
  • Bulk Workflow (RNA-seq / ATAC-seq)
  • Single-Cell Workflow (scRNA-seq / scATAC-seq)
  • WASP Mapping Bias Correction
  • Counting Module API
  • Mapping Module API
  • Analysis Module API
  • Development Guide
  • Changelog
  • GitHub
  • PyPI

Python Module Index

a | c | m
 
a
- analysis
    analysis.__main__
    analysis.as_analysis
    analysis.as_analysis_sc
    analysis.compare_ai
    analysis.run_analysis
    analysis.run_analysis_sc
    analysis.run_compare_ai
 
c
- counting
    counting.__main__
    counting.count_alleles
    counting.count_alleles_sc
    counting.filter_variant_data
    counting.parse_gene_data
    counting.run_counting
    counting.run_counting_sc
 
m
- mapping
    mapping.__main__
    mapping.filter_remap_reads
    mapping.intersect_variant_data
    mapping.make_remap_reads
    mapping.remap_utils
    mapping.run_mapping
    mapping.wasp_data_files

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