iPSCORE Utilities

Overview

wasp2-ipscore provides helper commands for working with the iPSCORE multi-tissue allelic imbalance resource bundled with WASP2.

Commands

inventory

Validate the expected iPSCORE data inventory and optionally write a TSV report.

wasp2-ipscore inventory --output inventory.tsv

manifest

Create a unified sample manifest across tissues and assays.

wasp2-ipscore manifest --output manifest.csv --format csv

qtls

Load and summarize QTL resources, optionally filtering by tissue.

wasp2-ipscore qtls --tissue iPSC --output qtls.tsv

validate

Run the combined inventory, manifest, and QTL validation workflow.

wasp2-ipscore validate

Notes

These commands are resource-management utilities. They do not replace the main wasp2-map, wasp2-count, or wasp2-analyze analysis workflows.